SE’s follow internal links as well as semantic analysis of your content. I have not had any problems with my site being indexed.
I have 1200 pages indexed on google from my CS-Cart store, so definatly no issues there !
[URL=“site:www.car-audio-accessories.co.uk - Google Search”]site:www.car-audio-accessories.co.uk[/URL] - Google Search
I’ve got a few 100, it takes time for google to come back and gather more pages, from my limited SEO knowledge it’s usually a technique to defer link-farms and other blackhat routines. Just give google a month to come back, and develop your product line up.