How to apply different js effects to different storefronts?

In CS-Cart Ultimate all storefronts use the same tabs.js and ajax.js file. So if you apply a javascript effect to the product tabs or pagination, then the js effect applies not only to the storefront that you are skinning, but it applies to all storefronts.

Is there a way to only apply a javascript effect to the tabs or pagination of one storefront?

Not only do javascipts applied to one storefront apply to all storefronts, they also apply to the admin panel. For example:

I have applied a jquery fade-in effect to my product tabs for one storefront, and this is also applied to other storefronts and the admin panel. In the admin panel this is very annoying.